hermes

Build a literature matrix

Extracts a comparison matrix across several papers (question, design, sample, findings, limitations) with every cell traceable to its source. Use when organising sources for a literature review.

context

A literature matrix (also called an evidence or synthesis table) puts every study on the same row structure so the reviewer can compare them and write a thematic synthesis instead of a list of summaries. It is only useful if it is faithful: a cell that paraphrases loosely, fills a gap with a guess or mixes up two papers poisons every later step of the review.

task

Build a matrix from these sources:

papers

Columns:

  1. Give each paper a short ID (first author + year, adding a/b for duplicates) and use it in every section.
  2. Fill one row per paper and one cell per column, using that paper's text only.
  3. Keep numbers exactly as written, with units and the comparison they belong to (for example "OR 1.42, 95% CI 1.10-1.83, smokers vs non-smokers").
  4. When a value is not stated, write "NR" (not reported). When you derived it rather than read it (for example a design you inferred from the description), add "[inferred]" and keep the inference minimal.
  5. After the table, record anything that made extraction uncertain and the patterns a reviewer should check next.
constraints
  • Never fill a cell from general knowledge about the paper or its authors. NR is a correct answer.
  • Keep each cell under about 25 words; put longer detail in the extraction notes.
  • Use the same vocabulary across rows (for example always "RCT", "cohort", "cross-sectional") so the columns can be sorted and compared.
  • If the input looks like a single paper, or the papers cannot be told apart, say so and ask how to split them before building the table.
  • Patterns are prompts for the reviewer to verify, not conclusions. Do not rank studies as better or worse unless a quality column was requested.
output format

Matrix

A Markdown table with "ID" as the first column, then the requested columns, one row per paper in chronological order.

Extraction notes

Bullets: ID, the cell, and what was ambiguous, missing or inferred. "None" if clean.

Patterns to check

Three to five bullets naming agreements, disagreements or differences in design, population or measures across rows, each citing the IDs involved.

1 required value still a placeholder; the assistant will ask for it.

details

kind
Prompt: a task you run by name to get one finished thing back
domain
Research and science
category
Literature review
level
Intermediate
made for
Researcher / scientist, Student
risk
read-only
version
v1.0.0 · experimental
reviewed
2026-10-02
works in
Claude Code, Codex, Cursor, GitHub Copilot, Gemini CLI, Antigravity, OpenCode, Windsurf, Zed, Continue, AGENTS.md, ChatGPT, claude.ai

Edit on GitHubReport a problem

use in

Hodios CLI
npx @hermes-hq/hodios install build-literature-matrix --target claude-code
Agent Skills
npx skills add hermes-hq/hodios-dist --skill build-literature-matrix -a claude-code
Add the Hodios marketplace (once)
claude plugin marketplace add hermes-hq/hodios-dist
Install the research-science plugin
claude plugin install hodios-research-science@hodios

The plugin brings every entry in this domain at once.

PromptLiterature review

Summarise a research paper

Summarises a research paper into its question, method, key results with exact numbers, limitations and what it means for the reader's purpose. Use before citing, relying on or reading a paper in full.

summarize-paper
PromptLiterature review

Find research gaps

Identifies gaps, contradictions and open questions across a set of abstracts or notes, ties each to its sources and turns it into a researchable question. Use when scoping a thesis, grant or review.

find-research-gaps
PromptLiterature review

Write a literature review section

Synthesises sources into a thematic literature review section with in-text citations and a reference list, organised by idea rather than paper by paper. Use for theses, articles and proposals.

write-literature-review-section
PromptLiterature review

Appraise a study's risk of bias

Appraises a study's risk of bias with the tool that fits its design, such as RoB 2, ROBINS-I, CASP or Newcastle-Ottawa, justifying each judgement with quotes. For reviewers and practitioners.

appraise-study-quality
PromptLiterature review

Build a database search strategy

Builds a Boolean search strategy for PubMed, Scopus, Web of Science or Google Scholar with concepts, synonyms, controlled vocabulary, filters and a search log. For systematic and narrative reviews.

build-search-string
PromptLiterature review

Extract effect-size data for a meta-analysis

Builds a data-extraction form and extracts effect-size inputs from study reports with their locations, logging every conversion and flagging missing statistics. For meta-analysis teams.

extract-data-for-meta-analysis