hermes

Plan a thesis structure

Plans a thesis or dissertation structure with each chapter's purpose, the argument flow, word budgets and a writing timeline working back from the deadline. For graduate students.

context

A thesis is one argument, not a collection of chapters. Examiners look for a clear question, a gap the student explains, methods that fit, results that answer the question, and a contribution stated plainly in the introduction and the conclusion. Structures differ by discipline and format: the classic IMRaD-style monograph in the sciences, thematic chapters in the humanities and parts of the social sciences, and the thesis by publication, where linking chapters must turn separate papers into one story. Students lose most time by writing in order from chapter one, letting the literature review grow without limit, and leaving the conclusion, formatting and institutional steps to the last week.

task

Plan the structure for a on:

topic

Only if [DEADLINE] is given: Deadline: Only if [WORD_LIMIT] is given: Word limit:

  1. The argument in brief: write the research question(s), the gap, the approach and the contribution as four sentences. If the topic does not yet contain a clear question or contribution, say so, offer two or three candidate formulations, and plan around the most feasible one, marked for the student to confirm.
  2. Chapter plan: propose a structure suited to the degree, format and discipline. For each chapter: working title, purpose in one sentence, the question it answers, its main content, what it hands to the next chapter, and the status of the material (done, partly done, not started) from what the student said. For a thesis by publication, include the linking chapters and how each paper connects to the overall question.
  3. Word budget: split the word limit across chapters with typical proportions for the format, and note what is excluded (references, appendices). If no limit was given, ask for it and use a placeholder budget labelled as typical, not institutional.
  4. Writing timeline: working back from the deadline, schedule chapters in a sensible order (often methods and results first, introduction and conclusion last), with buffer for supervisor feedback (assume two to three weeks per round unless told otherwise), revisions, proofreading, formatting, and the institution's submission steps. Show it by week or month with milestones. If no deadline was given, give durations instead of dates.
  5. Risks and questions for your supervisor: what could break the plan (data not yet collected, ethics, a co-author paper still under review, scope creep), and questions to settle with the supervisor (format rules, chapter order, use of published papers, word limit inclusions).
constraints
  • Institutions set their own rules for structure, limits and use of published work. Present the plan as a proposal to check with the supervisor and the graduate school regulations, and never state an institution's rule as fact.
  • Base status and timelines on what the student told you; do not assume work is done.
  • If the deadline is unrealistic for the remaining work, say so plainly and propose what to cut or how to negotiate.
  • Keep the plan to the student's own work; do not draft chapters.
output format

The argument in brief

Four labelled sentences.

Chapter plan

Table: chapter | working title | purpose | key content | status.

Word budget

Table: chapter | words | share of total.

Writing timeline

Table: period | task | milestone. Mark supervisor review points.

Risks and questions for your supervisor

Two short bullet lists.

2 required values still a placeholder; the assistant will ask for them.

details

kind
Prompt: a task you run by name to get one finished thing back
domain
Research and science
category
Scientific writing
level
Intermediate
made for
Student, Researcher / scientist
risk
read-only
version
v1.0.0 · incubating
reviewed
2026-10-02
works in
Claude Code, Codex, Cursor, GitHub Copilot, Gemini CLI, Antigravity, OpenCode, Windsurf, Zed, Continue, AGENTS.md, ChatGPT, claude.ai

Edit on GitHubReport a problem

use in

Hodios CLI
npx @hermes-hq/hodios install plan-thesis-structure --target claude-code
Agent Skills
npx skills add hermes-hq/hodios-dist --skill plan-thesis-structure -a claude-code
Add the Hodios marketplace (once)
claude plugin marketplace add hermes-hq/hodios-dist
Install the research-science plugin
claude plugin install hodios-research-science@hodios

The plugin brings every entry in this domain at once.

PromptScientific writing

Write a research proposal

Writes a research or grant proposal section (aims, significance, approach, timeline) mapped to the funder's criteria, with placeholders instead of invented data. Use for grant or thesis proposals.

write-research-proposal
PromptScientific writing

Write a replicable methods section

Writes a manuscript methods section another researcher could replicate, following the relevant reporting guideline and flagging every missing detail. For authors drafting a paper or thesis.

write-methods-section
PromptScientific writing

Write a discussion section

Writes a paper or thesis discussion covering principal findings, comparison with prior work, mechanisms, limitations, implications and future work, matching claims to the evidence. For authors.

write-discussion-section
PersonaScientific writing

Thesis advisor

Acts as a thesis advisor who sharpens the research question, keeps scope realistic, pushes for a clear contribution and sets milestones, with direct, supportive feedback. For graduate students.

thesis-advisor
PromptScientific writing

Explain research to the public

Turns a research paper into an accurate plain-language summary, press release, blog post or social thread without hype, keeping caveats, study type and effect sizes. Use for science communication.

explain-research-to-public
PromptScientific writing

Respond to peer reviewers

Drafts a point-by-point response to peer-review comments, giving the change made or a polite, evidenced rebuttal for each, never claiming unmade changes. Use for revise-and-resubmit.

respond-to-reviewers